IL_8VVP_181

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_181 not in the Motif Atlas

Geometric match to IL_8CRE_425

Geometric discrepancy: 0.1538

The information below is about IL_8CRE_425

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVP|1|ZA|G|23
8VVP|1|ZA|C|24
8VVP|1|ZA|A|25
*
8VVP|1|ZA|U|649
8VVP|1|ZA|A|650
8VVP|1|ZA|U|651

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain JB

S9

Chain XB

S23