IL_8VVP_202

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_202 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1009

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

8VVP|1|ZA|C|491
8VVP|1|ZA|C|492
8VVP|1|ZA|A|493
8VVP|1|ZA|C|494
8VVP|1|ZA|U|495
*
8VVP|1|ZA|A|508
8VVP|1|ZA|G|509

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain JB

S9

Chain YB

S24