IL_8VVP_209

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8VVP|1|ZA|U|627, 8VVP|1|ZA|A|628, 8VVP|1|ZA|U|630, 8VVP|1|ZA|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_209 not in the Motif Atlas

Geometric match to IL_8P9A_404

Geometric discrepancy: 0.1724

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VVP|1|ZA|G|611
8VVP|1|ZA|U|612
8VVP|1|ZA|G|613
8VVP|1|ZA|C|614
8VVP|1|ZA|C|615
8VVP|1|ZA|A|616
8VVP|1|ZA|G|617
*
8VVP|1|ZA|C|624
8VVP|1|ZA|G|625
8VVP|1|ZA|G|626
8VVP|1|ZA|U|627
8VVP|1|ZA|A|628
8VVP|1|ZA|A|629
8VVP|1|ZA|U|630
8VVP|1|ZA|U|631
8VVP|1|ZA|C|632

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DB

S3

Chain EC

S30

Chain UA

Transfer RNA; tRNA

Chain VA

mRNA

Chain XB

S23