IL_8VVP_214

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVP_214 not in the Motif Atlas

Geometric match to IL_4ERD_002

Geometric discrepancy: 0.2284

The information below is about IL_4ERD_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_10994.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8VVP|1|ZA|G|692
8VVP|1|ZA|A|693
8VVP|1|ZA|G|694
8VVP|1|ZA|C|695
*
8VVP|1|ZA|G|731
8VVP|1|ZA|U|732
8VVP|1|ZA|C|733
8VVP|1|ZA|C|734

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain HB

eS7

Chain WB

S15A