IL_8VVP_227
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_227 not in the Motif Atlas
- Geometric match to IL_8CRE_438
- Geometric discrepancy: 0.0611
- The information below is about IL_8CRE_438
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8VVP|1|ZA|C|1047
8VVP|1|ZA|G|1048
8VVP|1|ZA|A|1049
8VVP|1|ZA|A|1050
8VVP|1|ZA|G|1051
*
8VVP|1|ZA|C|1067
8VVP|1|ZA|G|1068
8VVP|1|ZA|U|1069
8VVP|1|ZA|A|1070
8VVP|1|ZA|G|1071
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain A
- uL3
- Chain AC
- S26
- Chain OB
- S14
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: