IL_8VVP_228
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8VVP|1|ZA|C|1153, 8VVP|1|ZA|U|1155, 8VVP|1|ZA|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_228 not in the Motif Atlas
- Geometric match to IL_8CRE_439
- Geometric discrepancy: 0.0838
- The information below is about IL_8CRE_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VVP|1|ZA|C|1091
8VVP|1|ZA|G|1092
8VVP|1|ZA|A|1093
*
8VVP|1|ZA|U|1152
8VVP|1|ZA|C|1153
8VVP|1|ZA|U|1154
8VVP|1|ZA|U|1155
8VVP|1|ZA|U|1156
8VVP|1|ZA|G|1157
8VVP|1|ZA|G|1158
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain BC
- S27
- Chain CB
- S2-like
- Chain LB
- S11
- Chain NB
- uS15
- Chain WB
- S15A
- Chain XB
- S23
Coloring options: