IL_8VVP_232
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVP_232 not in the Motif Atlas
- Geometric match to IL_8CRE_442
- Geometric discrepancy: 0.0627
- The information below is about IL_8CRE_442
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8VVP|1|ZA|G|1168
8VVP|1|ZA|G|1169
8VVP|1|ZA|A|1170
8VVP|1|ZA|G|1171
8VVP|1|ZA|U|1172
8VVP|1|ZA|A|1173
8VVP|1|ZA|U|1174
8VVP|1|ZA|G|1175
*
8VVP|1|ZA|U|1186
8VVP|1|ZA|G|1187
8VVP|1|ZA|A|1188
8VVP|1|ZA|A|1189
8VVP|1|ZA|A|1190
8VVP|1|ZA|C|1191
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain MA
- eL41
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
- Chain XB
- S23
Coloring options: