IL_8VVQ_012

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

8VVQ|1|WA|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_012 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.1766

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8VVQ|1|WA|A|121
8VVQ|1|WA|U|122
*
8VVQ|1|WA|A|147
8VVQ|1|WA|A|148
8VVQ|1|WA|A|149
8VVQ|1|WA|U|150
8VVQ|1|WA|G|151
8VVQ|1|WA|U|152

Current chains

Chain WA

28S rRNA

Nearby chains

Chain G

L7A

Chain M

L15

Chain YA

5.8S ribosomal RNA; 5.8S rRNA