IL_8VVQ_037

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

8VVQ|1|WA|A|936, 8VVQ|1|WA|G|937, 8VVQ|1|WA|A|939, 8VVQ|1|WA|C|941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|A|733
8VVQ|1|WA|A|734
8VVQ|1|WA|G|735
8VVQ|1|WA|G|736
*
8VVQ|1|WA|C|932
8VVQ|1|WA|A|933
8VVQ|1|WA|G|934
8VVQ|1|WA|C|935
8VVQ|1|WA|A|936
8VVQ|1|WA|G|937
8VVQ|1|WA|C|938
8VVQ|1|WA|A|939
8VVQ|1|WA|G|940
8VVQ|1|WA|C|941
8VVQ|1|WA|U|942

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain L

eL14

Chain R

L18A