IL_8VVQ_049

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8VVQ|1|WA|C|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_049 not in the Motif Atlas

Geometric match to IL_4V9F_090

Geometric discrepancy: 0.2984

The information below is about IL_4V9F_090

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_73464.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8VVQ|1|WA|G|1362
8VVQ|1|WA|G|1363
*
8VVQ|1|WA|C|1378
8VVQ|1|WA|G|1379
8VVQ|1|WA|C|1380
8VVQ|1|WA|C|1381

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain K

eL13

Chain M

L15