IL_8VVQ_053

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_053 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.2067

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8VVQ|1|WA|C|1476
8VVQ|1|WA|G|1477
8VVQ|1|WA|C|1478
*
8VVQ|1|WA|G|1491
8VVQ|1|WA|G|1492

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain K

eL13

Chain NA

eL42

Chain Z

L27A