IL_8VVQ_056

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

8VVQ|1|WA|G|1579

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_056 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1868

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8VVQ|1|WA|G|1552
8VVQ|1|WA|C|1553
*
8VVQ|1|WA|G|1578
8VVQ|1|WA|G|1579
8VVQ|1|WA|U|1580

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain OA

eL43

Chain Q

eL19