IL_8VVQ_089

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_089 not in the Motif Atlas

Geometric match to IL_8CRE_065

Geometric discrepancy: 0.0735

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VVQ|1|WA|G|2360
8VVQ|1|WA|U|2361
8VVQ|1|WA|A|2362
8VVQ|1|WA|G|2363
8VVQ|1|WA|U|2364
8VVQ|1|WA|A|2365
8VVQ|1|WA|G|2366
*
8VVQ|1|WA|C|3860
8VVQ|1|WA|G|3861
8VVQ|1|WA|A|3862
8VVQ|1|WA|A|3863
8VVQ|1|WA|A|3864
8VVQ|1|WA|C|3865

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain O

uL22