IL_8VVQ_094

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCGAU*GUUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|G|2483
8VVQ|1|WA|C|2484
8VVQ|1|WA|G|2485
8VVQ|1|WA|A|2486
8VVQ|1|WA|U|2487
*
8VVQ|1|WA|G|2495
8VVQ|1|WA|U|2496
8VVQ|1|WA|U|2497
8VVQ|1|WA|G|2498
8VVQ|1|WA|C|2499
8VVQ|1|WA|C|2500

Current chains

Chain WA

28S rRNA

Nearby chains

Chain W

uL23

Chain YA

5.8S ribosomal RNA; 5.8S rRNA