IL_8VVQ_108

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8VVQ|1|WA|G|3841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_108 not in the Motif Atlas

Geometric match to IL_8P9A_306

Geometric discrepancy: 0.0779

The information below is about IL_8P9A_306

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8VVQ|1|WA|A|2852
8VVQ|1|WA|G|2853
8VVQ|1|WA|U|2854
8VVQ|1|WA|C|2855
8VVQ|1|WA|G|2856
8VVQ|1|WA|G|2857
*
8VVQ|1|WA|C|3839
8VVQ|1|WA|U|3840
8VVQ|1|WA|G|3841
8VVQ|1|WA|U|3842

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain U

L23