IL_8VVQ_115

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8VVQ|1|WA|A|3748, 8VVQ|1|WA|A|3749

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_115 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.0748

The information below is about IL_3MXH_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VVQ|1|WA|U|3706
8VVQ|1|WA|G|3707
*
8VVQ|1|WA|U|3747
8VVQ|1|WA|A|3748
8VVQ|1|WA|A|3749
8VVQ|1|WA|A|3750

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain ZA

Small subunit ribosomal RNA; SSU rRNA