IL_8VVQ_118
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_118 not in the Motif Atlas
- Geometric match to IL_8P9A_316
- Geometric discrepancy: 0.1698
- The information below is about IL_8P9A_316
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.1
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VVQ|1|WA|U|3717
8VVQ|1|WA|C|3718
8VVQ|1|WA|A|3719
8VVQ|1|WA|A|3720
8VVQ|1|WA|A|3721
8VVQ|1|WA|G|3722
8VVQ|1|WA|U|3723
*
8VVQ|1|WA|A|3734
8VVQ|1|WA|A|3735
8VVQ|1|WA|U|3736
8VVQ|1|WA|G|3737
8VVQ|1|WA|A|3738
8VVQ|1|WA|A|3739
8VVQ|1|WA|G|3740
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain HA
- L36
- Chain NA
- eL42
- Chain TA
- Transfer RNA; tRNA
Coloring options: