IL_8VVQ_137

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_137 not in the Motif Atlas

Geometric match to IL_8CRE_114

Geometric discrepancy: 0.086

The information below is about IL_8CRE_114

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8VVQ|1|WA|C|4414
8VVQ|1|WA|C|4415
8VVQ|1|WA|A|4416
8VVQ|1|WA|A|4417
8VVQ|1|WA|G|4418
*
8VVQ|1|WA|C|4428
8VVQ|1|WA|G|4429
8VVQ|1|WA|A|4430
8VVQ|1|WA|C|4431
8VVQ|1|WA|G|4432

Current chains

Chain WA

28S rRNA

Nearby chains

Chain I

L10

Chain LA

eL40