IL_8VVQ_140

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8VVQ|1|WA|A|4520, 8VVQ|1|WA|C|4521

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_140 not in the Motif Atlas

Geometric match to IL_8P9A_336

Geometric discrepancy: 0.0491

The information below is about IL_8P9A_336

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

8VVQ|1|WA|C|4460
8VVQ|1|WA|U|4461
*
8VVQ|1|WA|A|4519
8VVQ|1|WA|A|4520
8VVQ|1|WA|C|4521
8VVQ|1|WA|G|4522

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain N

uL13

Chain U

L23