IL_8VVQ_143

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8VVQ|1|WA|A|4490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_143 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3908

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8VVQ|1|WA|U|4470
8VVQ|1|WA|U|4471
8VVQ|1|WA|G|4472
*
8VVQ|1|WA|C|4487
8VVQ|1|WA|C|4488
8VVQ|1|WA|A|4489
8VVQ|1|WA|A|4490
8VVQ|1|WA|G|4491

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain LA

eL40

Chain N

uL13