IL_8VVQ_145

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8VVQ|1|WA|A|4550

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_145 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.2568

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8VVQ|1|WA|C|4539
8VVQ|1|WA|G|4540
*
8VVQ|1|WA|C|4549
8VVQ|1|WA|A|4550
8VVQ|1|WA|G|4551

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain SA

Transfer RNA; tRNA