IL_8VVQ_148

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_148 not in the Motif Atlas

Geometric match to IL_5ZTM_002

Geometric discrepancy: 0.0881

The information below is about IL_5ZTM_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8VVQ|1|WA|A|4592
8VVQ|1|WA|U|4593
8VVQ|1|WA|C|4594
*
8VVQ|1|WA|G|4620
8VVQ|1|WA|U|4621
8VVQ|1|WA|U|4622

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain U

L23