IL_8VVQ_149
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_149 not in the Motif Atlas
- Geometric match to IL_8CRE_125
- Geometric discrepancy: 0.0675
- The information below is about IL_8CRE_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8VVQ|1|WA|C|4598
8VVQ|1|WA|U|4599
8VVQ|1|WA|C|4600
8VVQ|1|WA|A|4601
8VVQ|1|WA|G|4602
8VVQ|1|WA|U|4603
8VVQ|1|WA|A|4604
8VVQ|1|WA|C|4605
*
8VVQ|1|WA|G|4610
8VVQ|1|WA|G|4611
8VVQ|1|WA|A|4612
8VVQ|1|WA|A|4613
8VVQ|1|WA|C|4614
8VVQ|1|WA|C|4615
8VVQ|1|WA|G|4616
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain H
- L9
- Chain HC
- eukaryotic elongation factor 1A
- Chain LA
- eL40
- Chain U
- L23
- Chain UA
- Transfer RNA; tRNA
Coloring options: