IL_8VVQ_151

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

8VVQ|1|WA|U|4636, 8VVQ|1|WA|U|4638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_151 not in the Motif Atlas

Geometric match to IL_4V9F_094

Geometric discrepancy: 0.2412

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

8VVQ|1|WA|U|4634
8VVQ|1|WA|G|4635
8VVQ|1|WA|U|4636
8VVQ|1|WA|A|4637
8VVQ|1|WA|U|4638
8VVQ|1|WA|G|4639
*
8VVQ|1|WA|C|4664
8VVQ|1|WA|G|4665
8VVQ|1|WA|A|4666
8VVQ|1|WA|A|4667
8VVQ|1|WA|G|4668

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain CA

L31

Chain V

uL24