IL_8VVQ_157
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUCGGAUAG*UGCGGAGAG
- Length
- 19 nucleotides
- Bulged bases
- 8VVQ|1|WA|C|4759, 8VVQ|1|WA|U|4760, 8VVQ|1|WA|A|4766, 8VVQ|1|WA|G|4872, 8VVQ|1|WA|C|4873, 8VVQ|1|WA|G|4875, 8VVQ|1|WA|A|4878
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVQ_157 not in the Motif Atlas
- Homologous match to IL_9H3G_136
- Geometric discrepancy: 0.4948
- The information below is about IL_9H3G_136
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.2
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8VVQ|1|WA|C|4758
8VVQ|1|WA|C|4759
8VVQ|1|WA|U|4760
8VVQ|1|WA|C|4761
8VVQ|1|WA|G|4762
8VVQ|1|WA|G|4763
8VVQ|1|WA|A|4764
8VVQ|1|WA|U|4765
8VVQ|1|WA|A|4766
8VVQ|1|WA|G|4767
*
8VVQ|1|WA|U|4871
8VVQ|1|WA|G|4872
8VVQ|1|WA|C|4873
8VVQ|1|WA|G|4874
8VVQ|1|WA|G|4875
8VVQ|1|WA|A|4876
8VVQ|1|WA|G|4877
8VVQ|1|WA|A|4878
8VVQ|1|WA|G|4879
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain E
- L6
- Chain H
- L9
- Chain L
- eL14
- Chain N
- uL13
- Chain R
- L18A
Coloring options: