IL_8VVQ_186

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

8VVQ|1|ZA|G|113, 8VVQ|1|ZA|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_186 not in the Motif Atlas

Geometric match to IL_8P9A_381

Geometric discrepancy: 0.1026

The information below is about IL_8P9A_381

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VVQ|1|ZA|U|112
8VVQ|1|ZA|G|113
8VVQ|1|ZA|G|114
8VVQ|1|ZA|U|115
*
8VVQ|1|ZA|A|348
8VVQ|1|ZA|A|349

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain IB

S8

Chain LB

S11