IL_8VVQ_187

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_187 not in the Motif Atlas

Geometric match to IL_8CRE_399

Geometric discrepancy: 0.1387

The information below is about IL_8CRE_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8VVQ|1|ZA|U|116
8VVQ|1|ZA|C|117
8VVQ|1|ZA|C|118
8VVQ|1|ZA|U|119
8VVQ|1|ZA|U|120
8VVQ|1|ZA|U|121
*
8VVQ|1|ZA|A|343
8VVQ|1|ZA|U|344
8VVQ|1|ZA|U|345
8VVQ|1|ZA|C|346
8VVQ|1|ZA|G|347

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain IB

S8