IL_8VVQ_189

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_189 not in the Motif Atlas

Geometric match to IL_6RA4_002

Geometric discrepancy: 0.1298

The information below is about IL_6RA4_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8VVQ|1|ZA|U|152
8VVQ|1|ZA|G|153
8VVQ|1|ZA|U|154
*
8VVQ|1|ZA|A|164
8VVQ|1|ZA|G|165
8VVQ|1|ZA|A|166

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain V

uL24

Chain YB

S24