IL_8VVQ_194

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCCC*GUGGC

Length

9 nucleotides

Bulged bases

8VVQ|1|ZA|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_194 not in the Motif Atlas

Geometric match to IL_7WIE_001

Geometric discrepancy: 0.267

The information below is about IL_7WIE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59580.1

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8VVQ|1|ZA|G|320
8VVQ|1|ZA|C|321
8VVQ|1|ZA|C|322
8VVQ|1|ZA|C|323
*
8VVQ|1|ZA|G|327
8VVQ|1|ZA|U|328
8VVQ|1|ZA|G|329
8VVQ|1|ZA|G|330
8VVQ|1|ZA|C|331

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain V

uL24