IL_8VVQ_229

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_229 not in the Motif Atlas

Geometric match to IL_406D_004

Geometric discrepancy: 0.2031

The information below is about IL_406D_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8VVQ|1|ZA|U|1101
8VVQ|1|ZA|G|1102
8VVQ|1|ZA|C|1103
*
8VVQ|1|ZA|G|1129
8VVQ|1|ZA|G|1130
8VVQ|1|ZA|G|1131

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain BB

S3A

Chain BC

S27

Chain NB

uS15

Chain RB

eS17