IL_8VVQ_232

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8VVQ|1|ZA|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_232 not in the Motif Atlas

Geometric match to IL_8CRE_443

Geometric discrepancy: 0.0709

The information below is about IL_8CRE_443

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8VVQ|1|ZA|G|1203
8VVQ|1|ZA|A|1204
*
8VVQ|1|ZA|U|1694
8VVQ|1|ZA|A|1695
8VVQ|1|ZA|C|1696

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain CB

S2-like