IL_8VVQ_233

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

8VVQ|1|ZA|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_233 not in the Motif Atlas

Geometric match to IL_5J7L_040

Geometric discrepancy: 0.1705

The information below is about IL_5J7L_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8VVQ|1|ZA|G|1206
8VVQ|1|ZA|G|1207
8VVQ|1|ZA|A|1208
*
8VVQ|1|ZA|U|1691
8VVQ|1|ZA|U|1692

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain VA

mRNA