IL_8VVQ_247

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

8VVQ|1|ZA|C|1403, 8VVQ|1|ZA|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVQ_247 not in the Motif Atlas

Geometric match to IL_8CRE_481

Geometric discrepancy: 0.1314

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

8VVQ|1|ZA|A|1402
8VVQ|1|ZA|C|1403
8VVQ|1|ZA|U|1404
8VVQ|1|ZA|A|1405
*
8VVQ|1|ZA|U|1441
8VVQ|1|ZA|U|1442
8VVQ|1|ZA|C|1443
8VVQ|1|ZA|U|1444

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DB

S3

Chain GC

RACK1

Chain QB

uS9

Chain UB

uS10