IL_8VVR_004

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8VVR|1|YA|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_004 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.237

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8VVR|1|WA|C|6
8VVR|1|WA|C|7
*
8VVR|1|YA|G|149
8VVR|1|YA|C|150
8VVR|1|YA|G|151

Current chains

Chain WA

28S rRNA

Chain YA

5.8S rRNA

Nearby chains

Chain G

L7A

Chain M

eL15

Chain W

uL23