IL_8VVR_005

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8VVR|1|WA|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_005 not in the Motif Atlas

Geometric match to IL_8CRE_003

Geometric discrepancy: 0.2119

The information below is about IL_8CRE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8VVR|1|WA|A|12
8VVR|1|WA|U|13
8VVR|1|WA|C|14
*
8VVR|1|YA|G|143
8VVR|1|YA|U|144

Current chains

Chain WA

28S rRNA

Chain YA

5.8S rRNA

Nearby chains

Chain G

L7A

Chain M

eL15

Chain W

uL23