IL_8VVR_025

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

8VVR|1|WA|A|1305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_025 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3226

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8VVR|1|WA|G|443
8VVR|1|WA|G|444
8VVR|1|WA|U|445
8VVR|1|WA|C|446
*
8VVR|1|WA|G|1302
8VVR|1|WA|C|1303
8VVR|1|WA|U|1304
8VVR|1|WA|A|1305
8VVR|1|WA|C|1306

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain EA

eL33

Chain YA

5.8S ribosomal RNA; 5.8S rRNA