IL_8VVR_077
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVR_077 not in the Motif Atlas
- Geometric match to IL_4WF9_037
- Geometric discrepancy: 0.1472
- The information below is about IL_4WF9_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
8VVR|1|WA|C|1913
8VVR|1|WA|G|1914
8VVR|1|WA|C|1915
8VVR|1|WA|C|1916
8VVR|1|WA|C|1917
8VVR|1|WA|G|1918
8VVR|1|WA|A|1919
8VVR|1|WA|U|1920
*
8VVR|1|WA|G|2066
8VVR|1|WA|G|2067
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain EA
- eL33
- Chain F
- uL30
- Chain N
- uL13
- Chain R
- eL20
Coloring options: