IL_8VVR_081
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8VVR|1|WA|C|1937, 8VVR|1|WA|G|1942, 8VVR|1|WA|A|2043, 8VVR|1|WA|U|2046, 8VVR|1|WA|G|2047
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVR_081 not in the Motif Atlas
- Geometric match to IL_8CRE_055
- Geometric discrepancy: 0.1263
- The information below is about IL_8CRE_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83149.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVR|1|WA|G|1935
8VVR|1|WA|A|1936
8VVR|1|WA|C|1937
8VVR|1|WA|C|1938
8VVR|1|WA|C|1939
8VVR|1|WA|C|1940
8VVR|1|WA|A|1941
8VVR|1|WA|G|1942
8VVR|1|WA|A|1943
8VVR|1|WA|A|1944
8VVR|1|WA|A|1945
8VVR|1|WA|A|1946
*
8VVR|1|WA|U|2040
8VVR|1|WA|G|2041
8VVR|1|WA|A|2042
8VVR|1|WA|A|2043
8VVR|1|WA|A|2044
8VVR|1|WA|A|2045
8VVR|1|WA|U|2046
8VVR|1|WA|G|2047
8VVR|1|WA|G|2048
8VVR|1|WA|A|2049
8VVR|1|WA|U|2050
8VVR|1|WA|G|2051
8VVR|1|WA|G|2052
8VVR|1|WA|C|2053
8VVR|1|WA|G|2054
8VVR|1|WA|C|2055
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain EA
- eL33
- Chain I
- L10
- Chain LA
- eL40
- Chain N
- uL13
- Chain XA
- 5S ribosomal RNA; 5S rRNA
Coloring options: