IL_8VVR_149

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8VVR|1|WA|C|4722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_149 not in the Motif Atlas

Geometric match to IL_8P9A_342

Geometric discrepancy: 0.2438

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VVR|1|WA|C|4584
8VVR|1|WA|C|4585
8VVR|1|WA|A|4586
8VVR|1|WA|U|4587
*
8VVR|1|WA|A|4719
8VVR|1|WA|G|4720
8VVR|1|WA|G|4721
8VVR|1|WA|C|4722
8VVR|1|WA|G|4723

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain N

uL13