IL_8VVR_156

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8VVR|1|WA|A|4710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_156 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.245

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VVR|1|WA|G|4682
8VVR|1|WA|A|4683
8VVR|1|WA|U|4684
8VVR|1|WA|U|4685
8VVR|1|WA|A|4686
8VVR|1|WA|U|4687
*
8VVR|1|WA|A|4707
8VVR|1|WA|G|4708
8VVR|1|WA|A|4709
8VVR|1|WA|A|4710
8VVR|1|WA|U|4711
8VVR|1|WA|C|4712

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain LA

eL40

Chain N

uL13