IL_8VVR_162

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_162 not in the Motif Atlas

Geometric match to IL_4XW0_002

Geometric discrepancy: 0.2444

The information below is about IL_4XW0_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VVR|1|WA|U|4887
8VVR|1|WA|C|4888
8VVR|1|WA|C|4889
8VVR|1|WA|C|4890
*
8VVR|1|WA|G|4933
8VVR|1|WA|U|4934
8VVR|1|WA|C|4935
8VVR|1|WA|A|4936

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain L

eL14