IL_8VVR_169

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

8VVR|1|WA|G|5051

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_169 not in the Motif Atlas

Geometric match to IL_8P9A_359

Geometric discrepancy: 0.1846

The information below is about IL_8P9A_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8VVR|1|WA|G|5002
8VVR|1|WA|U|5003
8VVR|1|WA|U|5004
*
8VVR|1|WA|G|5047
8VVR|1|WA|U|5048
8VVR|1|WA|C|5049
8VVR|1|WA|A|5050
8VVR|1|WA|G|5051
8VVR|1|WA|C|5052

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain CA

L31

Chain V

uL24