IL_8VVR_182

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_182 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1121

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVR|1|ZA|U|34
8VVR|1|ZA|C|35
8VVR|1|ZA|U|36
*
8VVR|1|ZA|A|519
8VVR|1|ZA|A|520
8VVR|1|ZA|A|521

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain HC

eukaryotic elongation factor 1A

Chain JB

S9

Chain YB

S24