IL_8VVR_190

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8VVR|1|ZA|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_190 not in the Motif Atlas

Geometric match to IL_8CRE_400

Geometric discrepancy: 0.1387

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

8VVR|1|ZA|G|145
8VVR|1|ZA|G|146
8VVR|1|ZA|A|147
8VVR|1|ZA|U|148
8VVR|1|ZA|A|149
8VVR|1|ZA|A|150
8VVR|1|ZA|C|151
*
8VVR|1|ZA|G|167
8VVR|1|ZA|C|168
8VVR|1|ZA|U|169
8VVR|1|ZA|A|170
8VVR|1|ZA|A|171
8VVR|1|ZA|U|172
8VVR|1|ZA|A|173
8VVR|1|ZA|C|174

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain V

uL24

Chain YB

S24