IL_8VVR_205

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_205 not in the Motif Atlas

Geometric match to IL_8CRE_418

Geometric discrepancy: 0.1585

The information below is about IL_8CRE_418

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02511.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

2

Unit IDs

8VVR|1|ZA|G|563
8VVR|1|ZA|A|564
8VVR|1|ZA|G|565
*
8VVR|1|ZA|C|585
8VVR|1|ZA|G|586
8VVR|1|ZA|A|587
8VVR|1|ZA|G|588
8VVR|1|ZA|G|589
8VVR|1|ZA|A|590
8VVR|1|ZA|U|591
8VVR|1|ZA|C|592

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30

Chain JB

S9