IL_8VVR_230

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVR_230 not in the Motif Atlas

Geometric match to IL_8CRE_442

Geometric discrepancy: 0.083

The information below is about IL_8CRE_442

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8VVR|1|ZA|G|1168
8VVR|1|ZA|G|1169
8VVR|1|ZA|A|1170
8VVR|1|ZA|G|1171
8VVR|1|ZA|U|1172
8VVR|1|ZA|A|1173
8VVR|1|ZA|U|1174
8VVR|1|ZA|G|1175
*
8VVR|1|ZA|U|1186
8VVR|1|ZA|G|1187
8VVR|1|ZA|A|1188
8VVR|1|ZA|A|1189
8VVR|1|ZA|A|1190
8VVR|1|ZA|C|1191

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain WA

Large subunit ribosomal RNA; LSU rRNA

Chain XB

S23