IL_8VVR_261
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVR_261 not in the Motif Atlas
- Geometric match to IL_8CRE_474
- Geometric discrepancy: 0.0883
- The information below is about IL_8CRE_474
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8VVR|1|ZA|U|1733
8VVR|1|ZA|G|1734
8VVR|1|ZA|A|1735
8VVR|1|ZA|G|1736
*
8VVR|1|ZA|C|1798
8VVR|1|ZA|G|1799
8VVR|1|ZA|A|1800
8VVR|1|ZA|A|1801
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain GB
- eS6
- Chain IB
- S8
- Chain V
- uL24
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: