IL_8VVS_001

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_001 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1093

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVS|1|SA|U|2
8VVS|1|SA|C|3
8VVS|1|SA|U|4
*
8VVS|1|SA|A|69
8VVS|1|SA|A|70
8VVS|1|SA|A|71

Current chains

Chain SA

P-site tRNA

Nearby chains

Chain I

L10

Chain WA

Large subunit ribosomal RNA; LSU rRNA