IL_8VVS_010

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

8VVS|1|WA|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_010 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.3309

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8VVS|1|WA|C|118
8VVS|1|WA|G|119
8VVS|1|WA|A|120
8VVS|1|WA|A|121
*
8VVS|1|WA|U|152
8VVS|1|WA|G|153

Current chains

Chain WA

28S rRNA

Nearby chains

Chain G

L7A

Chain GA

L35

Chain M

eL15