IL_8VVS_028

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVS_028 not in the Motif Atlas

Geometric match to IL_8PFQ_001

Geometric discrepancy: 0.1662

The information below is about IL_8PFQ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVS|1|WA|G|462
8VVS|1|WA|A|463
8VVS|1|WA|G|464
*
8VVS|1|WA|C|692
8VVS|1|WA|A|693
8VVS|1|WA|C|694

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain PA

L28